Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs113541728 | chr10:104716771 | A/T | 5.63E-9 | 489 | 15.17 | 17.73 | 32.1 | KM Plot |
| THCA | rs11355227 | chr16:50134008 | TA/T | 0.000257 | 489 | 14.83 | 16.37 | 15.67 | KM Plot |
| THCA | rs113559643 | chr3:67882431 | C/G | 0.000255 | 484 | 15.65 | 17.6 | 14.03 | KM Plot |
| THCA | rs113563075 | chr6:26237063 | C/CAA | 3.2E-8 | 486 | 15.52 | 16.52 | 4.75 | KM Plot |
| THCA | rs11358727 | chr11:8626145 | GC/G | 4.71E-5 | 489 | 15.9 | 16.38 | 20.07 | KM Plot |
| THCA | rs1136268 | chr16:20747104 | C/T | 3.38E-5 | 490 | 16.38 | 14.47 | 17.65 | KM Plot |
| THCA | rs113649734 | chr8:8363768 | G/A | 4.0E-10 | 476 | 16.37 | 16.2 | 10.03 | KM Plot |
| THCA | rs113654674 | chr12:98978032 | T/C | 0.000274 | 469 | 15 | 17.08 | 21.03 | KM Plot |
| THCA | rs113654880 | chr13:24892762 | T/A | 0.000312 | 482 | 15.17 | 17.75 | 17.08 | KM Plot |
| THCA | rs113669672 | chr2:47583541 | C/T | 8.89E-6 | 484 | 16.2 | 15 | 14.63 | KM Plot |
| THCA | rs11367980 | chr8:52433361 | CA/C | 0.000245 | 482 | 14.85 | 17.65 | 19.72 | KM Plot |
| THCA | rs113702377 | chr8:8267718 | G/A | 7.19E-6 | 480 | 16.73 | 14.47 | 14.7 | KM Plot |
| THCA | rs113718602 | chr1:63659523 | G/A | 0.000121 | 479 | 15 | 15.9 | 18.53 | KM Plot |
| THCA | rs113730953 | chr2:48061221 | G/A | 1.14E-7 | 487 | 15.3 | 17.93 | 8.27 | KM Plot |
| THCA | rs11375161 | chr2:48304534 | A/AG | 1.21E-5 | 485 | 14.73 | 16.3 | 15.2 | KM Plot |